A lichen is a symbiotic organism by association of a lichen-forming fungus and an alga and/or a cyanobacterium (Hawksworth, 1988). And the organism is regarded as a consortium of above members and lichenicolous fungi, endolichenic fungi, and other bacteria in a wide sense. Lichen taxonomy is based on the lichen-forming fungi and lichens are classified in the kingdom fungi. The number of lichen species is approximately 19,000 recorded (Lücking et al., 2017). The family Arthoniaceae is the second largest group of the lichen-forming fungi, and this study focuses on a species of the main genus Arthonia in the family.
The genus Bryostigma (syn. Arthonia) was first introduced in 1979 just with a single species B. leucodontis Poelt & Döbbeler (Poelt and Döbbeler, 1979). The authors characterized the genus by the hyphae reaction to red or blue in iodine, the undifferentiated excipulum, the Arthonia-type asci with or without amyloid ring structures, the small ascomata, and importantly the substrate preference to bryophytes (Poelt and Döbbeler, 1979) which is assumingly the key characteristic to name the genus.
However, Bryostigma have been challenged for natural classification. In specific, the genus with the type species B. leucodontis was reclassified into Arthonia s. lat. mainly by its similarity with the specimens of A. apatetica (Coppins, 1989). Both species share the important characteristics of paraphysoids, i.e., brown-walled paraphysoidal tips and periclinally extended paraphysoids at epihymenium, which are the taxonomic key distinguishing from a closely related species, A. patellulata Fée, representing non- or faintly pigmented paraphysoidal tips and erect paraphysoids at epihymenium (Coppins, 1989). The type species was moved into Arthonia as A. muscigena Th. Fr. (Santesson, 1993), and was classified into the Bryostigma clade of Arthonia based on molecular phylogeny (Frisch et al., 2014). The type species of Bryostigma is named B. muscigenum (Th. Fr.) Frisch & G. Thor at present (Frisch et al., 2014). Since Frisch et al. (2014), several new species were discovered in the Bryostigma clade, such as A. parietinaria Hafellner & Fleischhacker, A. lobariellae Etayo, A. toensbergii Holien & Frisch, A. dokdoensis S.Y. Kondr., Lőkös, B.G. Lee, J.J. Woo & Hur, and B. huriellae S.Y. Kondr. & Hur (Fleischhacker et al., 2016; Etayo, 2017; Frisch and Holien, 2018; Kondratyuk et al., 2019, 2020a). The old species A. glebosa is classified in the Bryostigma clade as well (Halıcı and Kahraman, 2021). However, the taxonomy of B. apotheciorum (A. Massal.) S. Y. Kondr. et J.-S. Hur (syn. A. apotheciorum [A. Massal.] Almq.) may not be convincing (Kondratyuk et al., 2020b) as the species was classified far from the Bryostigma clade in molecular phylogeny (Frisch et al., 2014; Lee and Hur, 2016). Overall 18 species are recorded in the Bryostigma clade at present as other possible species, A. fuscopurpurea (Tul.) R. Sant., A. patellulata, and lichenicolous species, are not yet included due mainly to lack of molecular results.
This study describes a lichen-forming fungus in the Bryostigma clade of Arthonia, new to northeastern Asia. Field surveys for the lichen biodiversity in the southern region of the Mts. Baekdudaegan and the forested wetlands of Korea were carried out during the spring and summer of 2021, and overall 25 specimens of Arthonia were collected from the barks of the broad-leaved deciduous trees (Fig. 1). The specimens were comprehensively analyzed in ecology, morphology, chemistry and molecular phylogeny and corresponded to A. apatetica. Arthonia apatetica was previously reported from Europe (Wirth, 1995), North America (Brodo, 1995), the northwest Siberia (Sedelnikova and Taran, 2000), and Mongolia (Hauck and Javkhlan, 2006). We report the specimens as a new record to northeastern Asia. The specimens are deposited in the herbarium of the Baekdudaegan National Arboretum (KBA), South Korea.
Hand-cut sections were prepared with a razor blade under a stereomicroscope (Olympus optical SZ51; Olympus), examined under a compound microscope (Nikon Eclipse E400; Nikon) and imaged using a software program (NIS-Elements D; Nikon) and a DS-Fi3 camera (Nikon) mounted on a Nikon Eclipse Ni-U microscope (Nikon). The ascospores were investigated at 1000× magnification in water. The length and width of the ascospores were measured and the range of spore sizes was shown with average, standard deviation, and number of measured spores. Thin-layer chromatography (TLC) was performed using the solvent system C according to standard methods (Orange et al., 2001).
Isolation, DNA extraction, amplification, and sequencing: hand-cut sections of ascomata or thallus from all collected specimens were prepared for DNA isolation and DNA was extracted with a NucleoSpin Plant II Kit in line with the manufacturer’s instructions (Macherey-Nagel). PCR amplification for the mitochondrial small subunit (mtSSU), the nuclear large subunit ribosomal RNA (LSU), and the RNA polymerase subunit II (RPB2) genes was achieved using Bioneer’s AccuPower PCR Premix (Bioneer) in 20-μl tubes and primers mrSSU1 and mrSSU3R (Zoller et al., 1999), and LR0R and LR5 (Rehner and Samuels, 1994), and fRPB2-7cF and fRPB2-11aR (Liu et al., 1999), respectively. The PCR thermal cycling parameters used were 95°C (15 sec), followed by 35 cycles of 95°C (45 sec), 54°C (45 sec), and 72°C (1 min), and a final extension at 72°C (7 min) based on Ekman (2001). DNA sequences were generated by the genomic research company GenoTech.
Phylogenetic analyses: all mtSSU, LSU and RPB2 sequences were aligned and edited manually using ClustalW in Bioedit V7.2.6.1 (Hall, 1999). All missing and ambiguously aligned data and phylogenetically uninformative positions were removed and phylogenetically informative regions were finally analyzed in MEGA X (Stecher et al., 2020). The final alignment comprised 1347 (mtSSU), 2260 (LSU), and 2065 (RPB2) columns. In them, variable regions were 94 (mtSSU), 353 (LSU), and 32 (RPB2). Finally, the phylogenetically informative regions were 637 (mtSSU), 1113 (LSU), and 472 (RPB2). A concatenation was carried out for combining all mtSSU, LSU and RPB2 gene loci. They were manually combined for the informative regions. Two problematic sequences were removed when conflicting results occurred in the internal branches with the bootstrap values ≥ 70% and the posterior probabilities ≥ 95% in the concatenated tree. Phylogenetic trees with bootstrap values were obtained in RAxML GUI 2.0 beta (Edler et al., 2021) using the maximum likelihood method with a rapid bootstrap with 1,000 bootstrap replications and GTR GAMMA (TVM + G4 for both mtSSU and the concatenation of mtSSU, LSU and RPB2) for the substitution matrix. The posterior probabilities were obtained in BEAST 2.6.4 (Bouckaert et al., 2019) using the GTR 123421 (mtSSU) and the GTR 123121 (concatenation) models, as the appropriate model of nucleotide substitution produced by the Bayesian model averaging methods with bModelTest (Bouckaert and Drummond, 2017), empirical base frequencies, gamma for the site heterogeneity model, four categories for gamma, and a 10,000,000 Markov chain Monte Carlo chain length with a 10,000-echo state screening and 1,000 log parameters. Then, a consensus tree was constructed in TreeAnnotator 2.6.4 (Bouckaert et al., 2019) with the first 25% discard as a burn-in, no posterior probability limit, a maximum clade credibility tree for the target tree type, and median node heights. All trees were displayed in FigTree 1.4.2 (Rambaut, 2014) and edited in Microsoft Paint. Most sequences employed for the analyses are based on Frisch et al. (2014). Overall analyses in the materials and methods were accomplished based on Lee and Hur (2020).
Arthonia apatetica (Massal.) Th. Fr., Botaniska Notiser 56 (1866) (Fig. 2).
Thallus corticolous, crustose, smooth, olive-green, not developed or indistinct as getting old and mostly being disappeared; photobiont chlorococcoid, cells globose to subglobose, 5–20 μm diam. Prothallus absent. Apothecia simple, generally rounded, somewhat convex, dark brown to black, more brownish in water, not pruinose, 0.1–0.4 mm diam.; epihymenium brown to slightly grayish brown, 10–15 μm high; hymenium hyaline, 30–40 μm high; hypothecium pale brown, 30–40 μm high. Crystals or oil droplets not present. Interascal hyphae paraphysoidal, anastomosing, irregular but rather periclinally arranged at epihymenium, tips slightly swollen, not pigmented, branched, 1.5–2 μm thick, brown epihymenium not clearly pigmented by paraphysoidal tips. Asci 8-spored, clavate to narrowly clavate, 24–35 × 14–20 μm (n = 10). Ascospores constantly 1-septate, constricted at septum, upper cell wider and the lower longer, occasionally tales present on one or both ends, 11.5–17 × 4–6 μm (mean = 13.6 × 5.2 μm; SD = 1.1(L), 0.5(W); L/W ratio 2.0–3.4, ratio mean = 2.6, ratio SD = 0.3; n = 50), without epispore.
Chemistry: Epihymenium K+ greenish gray to blackish, hymenium I+ red-brown or blue, UV–. No lichen substance was detected by TLC.
Ecology and distribution: The species occurs on barks of diverse deciduous trees (e.g., Acer, Alnus, Carpinus, Celtis, or Diospyros). This species is distributed in Europe, North America, the northwest Russia, Mongolia, and Korea.
Remarks: Arthonia apatetica is characterized by small, black apothecia with 1-septate ascospores, absence of crystals, pale brown hypothecium, periclinally arranged paraphysoids at epihymenium, and chlorococcoid photobiont among corticolous species. Arthonia patellulata differs from A. apatetica by erect paraphysoids at epihymenium and darker hypothecium. Although B. muscigenum share the characteristic, i.e., the periclinally arranged paraphysoids at epihymenium, the former differs from the latter by narrower ascospores (2.5–4 μm) and darker hypothecium (Smith et al., 2009).
The Korean specimens are similar to those of Europe and North America with a little difference (Table 1). The Korean specimens are supposed to be classified into A. apatetica in morphology and molecular phylogeny and we regard that the difference in morphology is an infraspecific variation.
Specimen examined: SOUTH KOREA, South Jeolla Province, Jinan, Jucheon-myeon, a forested wetland, 35°59’45.4”N, 127°21’58.2”E, 680 m alt., on bark of Acer tataricum subsp. ginnala, 10 May 2021, B.G. Lee & D.Y. Kim 2021-000098, with Lecanora sp., Phaeophyscia rubropulchra (KBA-L-0001570; GenBank ON116972 for mtSSU, ON115808 for LSU, and ON260924 for RPB2); SOUTH KOREA, South Jeolla Province, Gwangju, Gwangsan-gu, Dodeuk-dong, a forested wetland (Jang Valley), 35°08’55.1”N, 126°42’42.9”E, 60 m alt., on bark of Diospyros kaki, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000165, with Graphis scripta, Phaeophyscia rubropulchra, Porina hirsuta (KBA-L-0001637; ON116973 for mtSSU, ON115809 for LSU); same locality, on bark of Alnus incana subsp. hirsuta, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000182, with Hypotrachyna pseudosinuosa, Traponora varians (KBA-L-0001654); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000194, with Hypotrachyna pseudosinuosa, Phaeophyscia rubropulchra, Porina hirsuta (KBA-L-0001666); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000197, with Hypotrachyna pseudosinuosa, Phaeophyscia rubropulchra (KBA-L-0001669); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000199, with Hypotrachyna pseudosinuosa, Phaeophyscia rubropulchra (KBA-L-0001671); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000200, with Hypotrachyna pseudosinuosa, Porina hirsuta (KBA-L-0001672); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000201, with Phaeophyscia rubropulchra (KBA-L-0001673); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000202, with Phaeophyscia rubropulchra (KBA-L-0001674); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000203, with Phaeophyscia rubropulchra, Porina hirsuta (KBA-L-0001675); same locality, on bark of Celtis sinensis, 11 May 2021, B.G. Lee & D.Y. Kim 2021-000205, with Graphis scripta, Hypotrachyna pseudosinuosa, Phaeophyscia rubropulchra, Porina hirsuta (KBA-L-0001677); SOUTH KOREA, North Jeolla Province, Jangsu, Mt. Youngchi, 35°38’35.5”N, 127°36’59.7”E, 905 m alt., on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000565, with Bacidia ekmaniana, Lecidella euphorea (KBA-L-0002037); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000568, with Lecidella euphorea, Phaeophyscia adiastola (KBA-L-0002040); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000570, with Anisomeridium polypori, Lecidella euphorea (KBA-L-0002042); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000571, with Anisomeridium polypori, Pertusaria sp. (KBA-L-0002043); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000572, with Caloplaca flavorubescens, Lecanora hafelliana, Lecidella euphorea (KBA-L-0002044); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000573, with Bacidia ekmaniana, Lecanora aff. perflexuosa, Lecidella euphorea, Porina hirsuta (KBA-L-0002045); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000574, with Rinodina orientalis (KBA-L-0002046); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000575, with Graphis scripta, Rinodina orientalis (KBA-L-0002047); same locality, on bark of Carpinus tschonoskii, 08 Jun 2021, B.G. Lee & H.J. Lee 2021-000576, with Pyrenula laevigata, Rinodina orientalis, Scoliciosporum chlorococcum (KBA-L-0002048); SOUTH KOREA, North Jeolla Province, Jangsu, Mt. Jangan, 35°38’35.0”N, 127°36’57.8”E, 925 m alt., on bark of Carpinus tschonoskii, 09 Jun 2021, B.G. Lee & H.J. Lee 2021-000774, with Lecidella euphorea, Micarea aff. elachista (KBA-L-0002046); same locality, on bark of Carpinus tschonoskii, 09 Jun 2021, B.G. Lee & H.J. Lee 2021-000775, with Lecanora sp., Lecidella euphorea (KBA-L-0002047); same locality, on bark of Carpinus tschonoskii, 09 Jun 2021, B.G. Lee & H.J. Lee 2021-000776, with Rinodina orientalis (KBA-L-0002048; ON115810 for LSU, ON260925 for RPB2); same locality, on bark of Carpinus tschonoskii, 09 Jun 2021, B.G. Lee & H.J. Lee 2021-000778, with Caloplaca gordejevii, Lecanora hafelliana, Rinodina orientalis (KBA-L-0002050; ON260926 for RPB2); SOUTH KOREA, North Jeolla Province, Jangsu, Mt. Jangan, 35°38’36.1”N, 127°36’53.9”E, 950 m alt., on bark of Carpinus tschonoskii, 09 Jun 2021, B.G. Lee & H.J. Lee 2021-000788, with Lecanora sp., Lecidella euphorea, Myelochroa xantholepis, Pertusaria multipuncta, Rinodina archaea, Rinodina orientalis (KBA-L-0002060).
Two phylogenetic trees (mtSSU, and the concatenation of all mtSSU, LSU and RPB2) for the genus Arthonia and related genera were produced from overall 184 sequences (72 for mtSSU, 55 for LSU, and 57 for RPB2) of GenBank and eight new sequences (two for mtSSU, and each three for LSU and RPB2) from the new record (Table 2). The sequences of the new record were positioned in the Bryostigma clade in both the mtSSU and the concatenation trees (Figs. 3 and 4). Both trees describe that the sequences of the new record are located in the clade and between the tips of A. apatetica, supported by the bootstrap values of 98 (mtSSU) and 100 (concatenation), and the posterior probabilities of 1.0 (both) for the branches.
An updated taxonomic key is introduced for the species of Arthonia in northeastern Asia (Korea, Japan, and China) (Table 3). Based on the key of Lee and Hur (2016), eight species were additionally reported from Korea and Japan, i.e., A. almquistii Vain., A. apatetica, A. dokdoensis S.Y. Kondr., Lőkös, B.G. Lee, J.J. Woo & Hur, A. incarnata Kullh. ex Almq., A. lopingensis Zahlbr., A. picea Vain., A. sanguinaria Frisch & Y. Ohmura, and A. ulleungdoensis B.G. Lee & Hur (Zhurbenko et al., 2015; Zhurbenko et al., 2015, 2018; Kondratyuk et al., 2019; Lee and Hur, 2019). Although previously recorded in China, A. lopingensis was newly discovered in Japan with specific information (Frisch et al., 2018).
It should be noted that there is a discrepancy between the genus Bryostigma and the Bryostigma clade. Although most species in the Bryostigma clade including recently reported new species (Fleischhacker et al., 2016; Etayo, 2017; Frisch and Holien, 2018; Kondratyuk et al., 2019, 2020a) are classified into the genus Bryostigma (Kondratyuk et al., 2020b), many species in the clade do not correspond to the definition of the genus Bryostigma of Poelt and Döbbeler (1979). Although the authors emphasized bryophytes for the genus substrate when they defined the genus, just one single species, B. muscigenum, is muscicolous yet all other species in the clade are lichenicolous, corticolous, saxicolous or terricolous. In addition, there has been a wrong taxonomy for B. apotheciorum (Kondratyuk et al., 2020b). Arthonia apotheciorum was classified far from the Bryostigma clade (Frisch et al., 2014; Lee and Hur, 2016), and the species should be remained in Arthonia s. lat. Kondratyuk et al. (2020b) confused the species assumingly with A. apatetica for the genus Bryostigma. The definition of the genus Bryostigma should be emended for the Bryostigma clade based on a preliminary definition (Frisch et al., 2014; Frisch and Holien, 2018) or remained for further studies without just combinationing of species in the clade to the genus. Other species possibly belonging to the Bryostigma clade should be considered in the new definition (e.g., A. fuscopurpurea, A. patellulata, and many other lichenicolous species).
티끌별지의 [Arthonia apatetica (A. Massal.) Th. Fr.]가 북동아시아지역 미기록종으로서 한국에서 최초 발견되었다. 너무 작아서 간과되기 쉬운 이 미생물은, 작고 검은 자낭과 속에 1-격벽의 포자를 가지고 있고, 수정결정이 없으며, 옅은 갈색의 자낭하층을 보여주고, 자낭상층의 균사체가 수평으로 정렬되어있고, 클로로코코이드(chlorococcoid) 녹조류를 가진 수피착생형 지의류이다. 분자분석법을 통해 mtSSU, LSU, RPB2 유전자 염기서열을 이용 종합 분석한 결과, 한국에서 채집된 지의류 표본이 티끌별지의(A. apatetica)임을 증명하였다. 이번 연구를 통해 해당 미기록종의 유전정보를 아시아 최초로 확보하였다. 더불어 북동아시아 별지의(Arthonia)속 지의류 총 54분류군에 대한 분류검색표를 새롭게 마련하였다.
This work was supported by a grant from Korean Forest Service Program through the Korea National Arboretum (KNA-202003127AF-00) for the forested wetland conservation of Korea.
The authors declare no conflicts of interest. All the experiments undertaken in this study comply with the current laws of the country where they were performed.